Citation:
eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale.
Carlos P. Cantalapiedra, Ana Hernandez-Plaza, Ivica Letunic, Peer Bork, and Jaime Huerta-Cepas. 2021
Molecular Biology and Evolution, msab293, https://doi.org/10.1093/molbev/msab293
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
Jaime Huerta-Cepas, Damian Szklarczyk, Davide Heller, Ana Hernández-Plaza, Sofia K Forslund, Helen Cook, Daniel R Mende, Ivica Letunic, Thomas Rattei, Lars J Jensen, Christian von Mering, Peer Bork. 2019
Nucleic Acids Res. 2019 Jan 8; 47(Database issue): D309–D314. doi: 10.1093/nar/gky1085
Please, check your output files for all the references requiring citation for your job.
License of use:
eggNOG data and the eggNOG-mapper tool are open-source and fully free resources for academics. However, any kind of commercial usage requires explicit licensing; please contact info@biobyte.de for further information.
News
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19-Jul-2022
eggNOG-mapper 2.1.9 just released! and it is running at eggNOG-mapper web, now including a new option to search against the novel families from Rodríguez et al 2022 ("Advanced Options" -> "Database" -> "Novel families") -
22-Oct-2021
- New blastx-like search options for genomic and metagenomic sequences
- New frameshift option for annotation of Nanopore reads
- Accepting gzipped files as input (file name must end in '.gz') -
01-Oct-2021
New eggNOG-mapper v2 paper in Advanced Access!
Method Overview
eggNOG-mapper v2 is a tool for functional annotation of large sets of sequences based on fast orthology assignments using precomputed eggNOG v5.0 clusters and phylogenies. The method is illustrated in the following figure:
